Software

• Transrate - transcriptome assembly quality analysis
• CRBB, Conditional annotation and Reciprocal Best Blast developed by Steve Kelly in our long-range trancsriptomics paper:
  • web based implementation from Steve
  • standalone implementation from our lab

Datasets

• Rice enhancer traps
• RNAseq reads for Cleome gynandra leaf gradient
• RNAseq reads for Setaria viridis mesophyll and bundle sheath cells

Protocols

• Mesophyll extraction by leaf rolling (video)
• Goldengate modification for Cter fusions
• Partical bombardment protocol

Lab meeting timetable

• Summer 2014
• Autumn 2014